Wow, the response to my problem is amazing. Thank you all so much but I have figured it with your suggestions and a boost-knowledgeable local legend here in Calgary.
The answer to my problem was indeed a MASSIVE BOOST LEAK because my friend found a massive hose connecting the Vacuum Canister was disconnected after inspecting every line (and finding it in great condition) except for the one inside the fender on the passenger side. I am a little angry I didn't check there sooner. He said it was hanging there so he plugged it back in, and now the primary turbo is boosting again 11+ psi on 3500rpm (I got to get a better non-ebay boost gauge to accurately measure!)
@ukscoobyguy;
You are right on the money. The flashing CEL gave me a 173 code, however when my friend hooked his expensive OBD2 code scanner into it, it gave a P1241 which was something going on with the primary turbo. I don't know if the flashing CEL code pattern was in THAT way because the REV D model I have was OBD2 compliant and others who gave a more "traditional" code weren't? I am not sure. However if someone else has a flashing 173 code and haven't hooked in a OBD2 scanner, it may correlate to a P1241 code?
@Kong
There was no hissing in Line 1 but after he reconnected the big hose to the vacuum canister, there was hissing. You were right that there is something going on with the vacuum. I should have checked more closer to the vacuum canister like you suggested much earlier.
To everyone, thank you for taking the time for helping me and making me learn more about the car! I hope this can help others and I'll post my car once I fix the little things up and make her more 'presentable'.